Loading Data

Follow the steps below to load data into your CellBase instance. You must have all prerequistes installed, see [Service configuration ] for details.

Downloading the data

Run this command to download all the data:

$ ./build/bin/cellbase-admin.sh download -d gene -s hsapiens

See [Download Sources] for the details on all the data that's available to download.

Building the data

Run this command to download all the data:

$ ./build/bin/cellbase-admin.sh build -d gene -s hsapiens

See [Building the CellBase database] for the details on how to build.

Loading the data

Run this command to download all the data:

$ ./build/bin/cellbase-admin.sh load -d gene -s hsapiens

See [Load Data] for the details on all the data that's available to download.

Web services

CellBase has two options:

REST API

$ ./build/bin/cellbase-admin.sh server --start View the API here: http://localhost:9090/cellbase-5.0.0-SNAPSHOT/webservices/

Tomcat

Make sure Tomcat is running, then copy the WAR file the build has created for you into Tomcat's webapps directory:

cp ./build/cellbase-5.0.0-SNAPSHOT.war ~/apache-tomcat-8.5.47/webapps/

You should see the generated API docs here:

http://localhost:8080/cellbase-5.0.0-SNAPSHOT/webservices/